FastQCFastQC Report
Sat 31 Dec 2022
SRR1953851.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953851.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences702237
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA27330.389184847850512No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA15580.2218624196674342No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC14100.20078691381969332No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA11900.16945845918115962No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC11280.1606295310557547No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC11080.15778148972497888No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA8960.1275922516187555No Hit
GCGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA8110.11548807596295838No Hit
AGGCTTGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGAT7090.10096306517600184No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)