FastQCFastQC Report
Sat 31 Dec 2022
SRR1953847.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953847.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences718730
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA30410.42310742559792963No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC20540.2857818652345109No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA16700.23235429159767923No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA15890.22108441278366006No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC15880.22094527847731416No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA14490.20160560989523185No Hit
GCGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA9440.13134278519054443No Hit
TGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA8430.11729022024960693No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC8200.11409013120365087No Hit
TGGCCTGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGAT8140.11325532536557538No Hit
GAGCCTGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGAT7960.11075090785134892No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)