FastQCFastQC Report
Sat 31 Dec 2022
SRR1953846.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953846.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences879959
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA18740.21296446766269791No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC17200.1954636522837996No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA13420.1525071054446855No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA13330.15148433051994467No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA10180.11568720815401626No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)