FastQCFastQC Report
Sat 31 Dec 2022
SRR1953844.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953844.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences699897
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA30660.4380644580559711No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC19300.2757548610724149No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA15670.2238900866841835No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC14390.20560168139026172No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA13880.19831489490596474No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA13840.19774338224052967No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC12480.17831195161573773No Hit
GCGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA9260.13230518204821567No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT8410.1201605379077207No Hit
AGGCCTGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGAT7880.1125879950907062No Hit
GTGCACGGGGTCTTTCCGTCTAACCGCGGGTACTCCGCATCTTCACGGAGA7770.1110163352607598No Hit
GGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA7520.10744438110179069No Hit
GTACCTGGGCTTCATTTCAGAGCTTGCACCCCTCCACTTAACCTTCAGGCA7060.10087198544928755No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)