FastQCFastQC Report
Sat 31 Dec 2022
SRR1953843.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953843.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences639245
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA26670.41721092851723524No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC16620.2599942119218766No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA14340.22432713591815345No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA12210.19100657807257No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA11440.1789611181941196No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC10280.1608147111045061No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC9790.15314941845458313No Hit
GCGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA8170.12780702234667457No Hit
ACGATTGGGGGCCTTAGCTGTAGGTCAGGGCTGTTTCCCTTTTGACGACGG7340.11482295520496837No Hit
AGGCCTGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGAT6960.10887844253768117No Hit
TGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA6890.10778340073054932No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)