FastQCFastQC Report
Sat 31 Dec 2022
SRR1953840.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953840.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences935235
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA27920.2985345929098034No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCAAAGAGTCGTATGCCG25300.2705202435751442No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAAAGAGTCGTATGC19960.2134222949312205No Hit
GAATCTGTCTCTTATACACATCTGACGCCCAAAGAGTCGTATGCCGTCTTC18610.19898742027404875No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA18220.19481734537308804No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC16960.1813447956930611No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA14240.1522611963837966No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA14000.14969499644474385No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC11350.12135987211770304No Hit
GCGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA11070.11836597218880815No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)