FastQCFastQC Report
Sat 31 Dec 2022
SRR1953838.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953838.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences653516
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA27450.420035622693247No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC15720.2405449904822529No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC14640.22401899876973172No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA13550.20733998861542793No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA13490.20642187796473233No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA13040.19953604808451514No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC10610.16235256673134246No Hit
TAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA7010.10726592768960516No Hit
GTACTAGGGTCAACTCCTCTCAAATTTCGACGCCCACGGCAGATAGGGACC6920.10588876171356172No Hit
GCGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA6900.1055827248299965No Hit
TGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA6830.1045115957375183No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)