FastQCFastQC Report
Sat 31 Dec 2022
SRR1953836.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953836.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences775114
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA37600.48508993515792515No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA21640.27918473927706117No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC19410.25041477769721615No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA17920.23119179888377708No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC16420.21183980678971095No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA14240.18371491161300144No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC10330.13327071888780231No Hit
ACGATTGGGGGCCTTAGCTGTAGGTCAGGGCTGTTTCCCTTTTGACGACGG9970.12862624078522644No Hit
GCGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA9450.12191755019261682No Hit
AGGCCTGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGAT9260.11946629786070179No Hit
GTGCACGGGGTCTTTCCGTCTAACCGCGGGTACTCCGCATCTTCACGGAGA9080.11714405880941384No Hit
TGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA8850.11417675335499036No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)