FastQCFastQC Report
Sat 31 Dec 2022
SRR1953831.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953831.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences736922
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA26160.35499008036128654No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA18350.24900871462651408No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC16350.22186880022580407No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA12720.17260985558851547No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA11650.15809000138413562No Hit
GCGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA9600.13027158912340792No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC8420.11425903962698901No Hit
AGGCTTGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGAT8210.11140934861491446No Hit
GTGCACGGGGTCTTTCCGTCTAACCGCGGGTACTCCGCATCTTCACGGAGA7710.10462437001473697No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC7460.10123188071464824No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)