FastQCFastQC Report
Sat 31 Dec 2022
SRR1953829.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953829.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences919800
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA36480.39660795825179385No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA25790.2803870406610133No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA19750.2147205914329202No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC19330.2101543813872581No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA17010.18493150684931506No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC15740.1711241574255273No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC14210.15449010654490106No Hit
GCGATTGGGGGCCTTAGCTGTAGGTCAGGGCTGTTTCCCTTTTGACGACGG12860.13981300282670145No Hit
GCGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA10590.11513372472276581No Hit
GTGCACGGGGTCTTTCCGTCTAACCGCGGGTACTCCGCATCTTCACGGAGA9770.10621874320504458No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)