FastQCFastQC Report
Sat 31 Dec 2022
SRR1953825.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953825.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495132
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA16270.3285992422222761No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA11000.2221629787612192No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC10740.21691185380868133No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA8380.16924779654718336No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA7850.15854358029777918No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC6720.1357213833886721No Hit
GCGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA5860.11835227777643134No Hit
TGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA5750.11613064798881914No Hit
GGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA5160.10421463367344466No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)