FastQCFastQC Report
Sat 31 Dec 2022
SRR1953819.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953819.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1116343
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT29730.2663159978608725No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT24690.2211685834909163No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT22800.20423830310218274No Hit
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA15360.1375921199846284No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT14190.12711147022017424No Hit
GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC13350.1195869011585149No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)