FastQCFastQC Report
Sat 31 Dec 2022
SRR1953817.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953817.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1068404
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT22850.2138704085720383No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT20050.18766309373607737No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT19340.18101766747410156No Hit
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA13760.12879023290815084No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)