FastQCFastQC Report
Sat 31 Dec 2022
SRR1953814.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953814.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences787993
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT20750.26332721229757117No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT17010.2158648617436957No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT16350.20748915282242353No Hit
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA9640.12233611212282343No Hit
GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC9010.11434111724342728No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT8570.10875731129591253No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)