FastQCFastQC Report
Sat 31 Dec 2022
SRR1953811.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953811.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences683999
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA16250.23757344674480516No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA13440.1964915153384727No Hit
GTGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA11750.17178387687701296No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT10010.1463452431948No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC10000.14619904415064935No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC9330.13640370819255584No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT8710.12733936745521557No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT8670.12675457127861298No Hit
AGGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA7580.11081887546619221No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)