FastQCFastQC Report
Sat 31 Dec 2022
SRR1953804.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953804.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences847530
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT23560.27798426014418365No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT19440.22937241159604968No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT19010.22429884487864737No Hit
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA15970.18842990808584947No Hit
GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC12560.14819534411761234No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT11260.13285665404174485No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC11230.13250268427076328No Hit
CACTATGACCGACTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGC8700.10265123358465186No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)