FastQCFastQC Report
Sat 31 Dec 2022
SRR1953800.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953800.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences600367
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA14520.24185206715225854No Hit
GTGCAAGGGGTACGCTGTCAGGCCATAAAAGCCCTCCAACTGCTTGTAGGC14510.2416855023677184No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT8320.1385819007373823No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT8160.13591686418474033No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT7500.12492358840509221No Hit
GAGCGAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATCTCACGACACGA7030.11709504353170644No Hit
AAGATAGGGACCAAACTGTCTCGCGACGTTCTGAACCCAGCTCACGTACCA6800.11326405348728362No Hit
GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC6310.10510237904481758No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT6050.10077169464677439No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)