FastQCFastQC Report
Sat 31 Dec 2022
SRR1953753.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953753.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1745062
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT69370.39752169263900083No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT59180.3391283518866378No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT58190.3334552010186458No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT42740.244919664745436No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT32170.18434875093263162No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT24810.14217259902513493No Hit
AGTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT23460.13443648420514573No Hit
AGAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT20760.11896425456516731No Hit
GTGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT20520.1175889452638359No Hit
GGGCATGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT19320.11071239875717882No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC19090.10939439401006956No Hit
GGGGTAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT17810.10205941106963534No Hit
AAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT17770.10183019285274678No Hit
GGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG17670.10125714731052536No Hit
GGAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT17530.10045488355141535No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)