FastQCFastQC Report
Sat 31 Dec 2022
SRR1953746.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953746.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1564209
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT72590.46406842052436725No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT68350.43696206836810175No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT59510.3804478813253216No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT46550.2975945030363589No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT33130.21180034125874483No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT32890.21026601943857884No Hit
GGAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT29720.19000018539721994No Hit
GTGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT29430.1881462131978527No Hit
AGTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT26620.17018186188674275No Hit
GGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG21590.13802503373909752No Hit
AGGGTAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT19380.1238964869784025No Hit
AAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT19370.12383255690256226No Hit
GGGCATGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT19170.12255395538575728No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG16570.10593213566729254No Hit
GGTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT16500.1054846251364108No Hit
GGGGTAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT15870.10145703035847511No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)