FastQCFastQC Report
Sat 31 Dec 2022
SRR1953730.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953730.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1004835
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT43080.42872710444998435No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40940.40743007558454875No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT35640.3546850975533296No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT29010.28870411560106884No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT22990.22879378206372192No Hit
GTGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT20800.2069991590659163No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT20510.20411311309817037No Hit
GGAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT19180.19087710917712858No Hit
GGGCATGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT17730.17644687933839884No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG16240.16161857419377312No Hit
AGTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT15790.15714022700244318No Hit
GGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG14420.14350614777550544No Hit
GCCCCCGACGCCATGGAGGAGTGGGATGTGCCCCAGATGAAGAAGGAGGTA13530.1346489722193196No Hit
GGGCAGGGGCTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTC13500.1343504157398976No Hit
AGAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT11610.11554135753631192No Hit
CTAAAGGACCAAGATACTAACAAAACCAAAGTGATCAGGACGATTATTGAG11380.11325242452740997No Hit
AAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT11290.11235675508914399No Hit
GTACAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG10780.10728129493897008No Hit
GGGACAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT10330.10280294774764016No Hit
GTACGAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG10240.10190727830937417No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)