FastQCFastQC Report
Sat 31 Dec 2022
SRR1953712.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953712.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1687807
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT173451.0276648929646577No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT33020.1956384823620236No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT30050.17804168367591794No Hit
CTAAAGGACCAAGATACTAACAAAACCAAAGTGATCAGGACGATTATTGAG27240.1613928606766058No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT23390.13858219571313543No Hit
GAATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTC21600.12797671771713234No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT19870.11772673060367685No Hit
GCCCTGCTAGAGGACTTTCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC19390.11488280354329612No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17490.10362559226262244No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)