FastQCFastQC Report
Sat 31 Dec 2022
SRR1953711.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953711.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1544006
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT79750.5165135368644941No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT26680.17279725596921255No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT26650.17260295620612873No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC22270.1442351907958907No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT21260.13769376543873535No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT20690.13400206994014272No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20620.13354870382628045No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT19060.12344511614592173No Hit
GGTAAAGGGATGGAACAACTTGAGAGCTCGGGTTGGCTCAGTCCCACAATG18270.11832855571804772No Hit
GGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG15560.10077681045280913No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)