FastQCFastQC Report
Sat 31 Dec 2022
SRR1953708.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953708.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2161315
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT89680.4149325757698438No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT54060.2501255022983693No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT49480.2289346994769388No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT43070.19927682915262235No Hit
GAATCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTC37970.1756800836527762No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCG37390.1729965322037741No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT37330.17271892343318768No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT30170.1395909434765409No Hit
GGAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT28540.13204923854227635No Hit
GGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG28400.13140148474424135No Hit
GTGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT28250.1307074628177753No Hit
GTGCAAGGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTG26290.1216389096452854No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC24470.11321811027083048No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGC24360.1127091608580887No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA23230.1074808623453777No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)