FastQCFastQC Report
Sat 31 Dec 2022
SRR1953704.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953704.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences952220
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT48260.5068156518451619No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA24100.2530927726785827No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC23470.24647665455461973No Hit
ATGAATGATACCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGC22990.24143580265064796No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT12190.1280166348112831No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT12090.12696645733128897No Hit
ATGAATCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCGTCT10700.11236899035937074No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)