FastQCFastQC Report
Sat 31 Dec 2022
SRR1953685.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953685.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences684345
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21120.3086162681103829No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC19550.2856746231798289No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCG15800.2308777005750024No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGC9380.13706536907553937No Hit
GAATCTGTCTCTTATACACATCTGACGCATACCGCATCGTATGCCGTCTTC7980.11660785130307083No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)