FastQCFastQC Report
Sat 31 Dec 2022
SRR1953666.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953666.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1059947
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38420.36247095373636606No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC22960.21661460431512142No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCG21830.20595369391111065No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGC19300.18208457592690955No Hit
GAATCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTC13140.1239684625740721No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)