FastQCFastQC Report
Sat 31 Dec 2022
SRR1953654.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953654.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1757821
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT49180.2797782026725133No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCG31110.17698047753440196No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC26830.152632150827644No Hit
GAATCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTC22350.1271460518448693No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGC19210.1092830271114067No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)