FastQCFastQC Report
Sat 31 Dec 2022
SRR1953653.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953653.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1144952
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40420.3530278998595574No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC20750.18123030485120772No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT11980.10463320733096235No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT11570.1010522711869144No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)