FastQCFastQC Report
Sat 31 Dec 2022
SRR1953644.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953644.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1138700
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT77550.6810397822077808No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC35170.3088609818213752No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT23520.20655133046456486No Hit
GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC21940.19267585843505752No Hit
CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC16470.14463862299113023No Hit
TCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC15190.1333977342583648No Hit
GAGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT12600.11065249846315973No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11440.10046544304909107No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)