FastQCFastQC Report
Sat 31 Dec 2022
SRR1953546.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953546.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences869119
Sequences flagged as poor quality0
Sequence length51
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCG30760.35392161487667395No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28730.33056462923949426No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGC21900.2519793031794265No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC20360.2342602106270833No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC20140.23172891169103427No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11130.12806071435557156No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)