FastQCFastQC Report
Sat 31 Dec 2022
SRR1953545.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953545.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1628089
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCG147170.9039432119497154No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGC101370.622631809440393No Hit
GAATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC90760.5574633819158535No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC68250.41920312710177393No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT65900.40476902675467985No Hit
GAATCTGACTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC34600.21251909447210807No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26500.16276751455233712No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCT24320.14937758316652222No Hit
GAACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT23010.14133133999431235No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTC22210.13641760370593992No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA21290.1307668069743116No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTACTCGGT21260.13058254186349763No Hit
GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC18530.11381441677942668No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTA16780.10306561864861195No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)