FastQCFastQC Report
Sat 31 Dec 2022
SRR1953544.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953544.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1176144
Sequences flagged as poor quality0
Sequence length51
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36330.3088907480716647No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC21560.18331088710225957No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14490.12319920009794719No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)