FastQCFastQC Report
Sat 31 Dec 2022
SRR1953527.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953527.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1843255
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT182550.990367583432569No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC143360.7777545700404991No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCG119870.6503169664533665No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT75360.40884196706369985No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGC71260.38659870717833394No Hit
GAATCTGACTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC47260.2563942590688755No Hit
GAACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCT43170.23420525103688855No Hit
GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC25650.13915600391698382No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCT24190.13123523332365844No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTT24000.13020444810945855No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTC23390.12689508505334313No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)