FastQCFastQC Report
Sat 31 Dec 2022
SRR1953509.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953509.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2859143
Sequences flagged as poor quality0
Sequence length51
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT135820.4750374500331043No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC56240.19670229855589597No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50040.1750174790138164No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA47040.1645248243966811No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)