FastQCFastQC Report
Sat 31 Dec 2022
SRR1953501.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953501.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1049164
Sequences flagged as poor quality0
Sequence length86
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37610.35847589128105806No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA25470.24276471552588538No Hit
GAGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTC24770.2360927366932148No Hit
GAGAGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCT20640.19672806158045836No Hit
AAGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTC16800.16012749198409398No Hit
AAGAGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCT16120.15364614111807115No Hit
TAGAGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCT14880.14182720718591182No Hit
GCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTG14720.14030218345273No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)