FastQCFastQC Report
Sat 31 Dec 2022
SRR1953500.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953500.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1642341
Sequences flagged as poor quality0
Sequence length86
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA63790.3884089844922583No Hit
GAGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC62030.37769257419744134No Hit
AAGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC45130.27479067988925565No Hit
GCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTG39680.24160634119223717No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39180.23856190644939143No Hit
GAGAGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCT34860.21225799027120434No Hit
AAGAGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCT33470.2037944616860932No Hit
CTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTGC31710.19307805139127623No Hit
TAGAGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCT31170.18979006186900282No Hit
AGAGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTT22120.13468579302349512No Hit
CCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTG21420.1304235843835111No Hit
TCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCTG19810.12062050451154785No Hit
AGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTCT19470.11855028888641274No Hit
TAGCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCTTC16950.10320633778247026No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)