FastQCFastQC Report
Sat 31 Dec 2022
SRR1953496.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953496.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1506202
Sequences flagged as poor quality0
Sequence length86
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTTAACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATT47660.31642502134507855No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47470.31516357035776077No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA41850.2778511779960457No Hit
GAGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTC29200.1938650991035731No Hit
GAGAGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT19230.12767211834800377No Hit
AAGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTC15640.10383733390342065No Hit
TAGAGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT15530.1031070201739209No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)