FastQCFastQC Report
Sat 31 Dec 2022
SRR1953490.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953490.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1584006
Sequences flagged as poor quality0
Sequence length86
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA58680.3704531422229461No Hit
GAGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC41390.26129951527961387No Hit
GAGAGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCT34110.2153400934087371No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30310.1913502852893234No Hit
AAGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC28380.17916598800762118No Hit
AAGAGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCT28070.177208924713669No Hit
TAGAGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCT23090.14576964986243737No Hit
GCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTG20920.1320702068047722No Hit
CTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC16640.10505010713343257No Hit
AGAGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTT15900.10037840765754676No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)