FastQCFastQC Report
Sat 31 Dec 2022
SRR1953489.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953489.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1773846
Sequences flagged as poor quality0
Sequence length86
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39250.2212706176297153No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA30570.17233739569274897No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCT25160.14183869400162133No Hit
GAGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTC23870.13456636032665745No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)