FastQCFastQC Report
Sat 31 Dec 2022
SRR1953488.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953488.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences350713
Sequences flagged as poor quality0
Sequence length86
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16210.46220128709229485No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA12220.34843304924539437No Hit
GAGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC5370.15311665093680588No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC4700.1340127112482286No Hit
GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG4640.13230191067910227No Hit
CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG4370.12460330811803384No Hit
AAGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC4280.12203710726434436No Hit
GAGAGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCT4200.11975603983884259No Hit
AAGAGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCT3900.11120203699321098No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)