FastQCFastQC Report
Sat 31 Dec 2022
SRR1953485.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953485.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1214077
Sequences flagged as poor quality0
Sequence length86
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27450.22609768573162986No Hit
GAGCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCTTC27340.2251916476467308No Hit
GAGAGCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCT25460.20970663310481957No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA25010.20600011366659612No Hit
AAGCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCTTC19540.16094531071752452No Hit
TAGAGCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCT18790.15476777832048544No Hit
AAGAGCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCT18160.14957865110697263No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)