FastQCFastQC Report
Sat 31 Dec 2022
SRR1953483.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953483.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1662321
Sequences flagged as poor quality0
Sequence length86
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44100.2652917216349911No Hit
GAGAGCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCGTCT26860.1615813071001329No Hit
GAGCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCGTCTTC26310.15827268018631782No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA21370.12855519481496053No Hit
AAGAGCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCGTCT19320.11622303995437705No Hit
AAGCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCGTCTTC18620.11201206024588513No Hit
TAGAGCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCGTCT17790.10701904144867326No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)