FastQCFastQC Report
Sat 31 Dec 2022
SRR1953476.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953476.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences730203
Sequences flagged as poor quality0
Sequence length86
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT29460.4034494517278072No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA10400.1424261472494635No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCT9870.13516789166848123No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9870.13516789166848123No Hit
GAGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTC9180.12571846459135336No Hit
AAGAGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCT8820.12078832872502578No Hit
GCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTG8590.11763851969931649No Hit
CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTG8350.1143517624550981No Hit
AAGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTC8150.11161279808491611No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC7840.10736740331113402No Hit
TAGAGCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCT7630.10449149072244293No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)