FastQCFastQC Report
Sat 31 Dec 2022
SRR1953475.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953475.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1892394
Sequences flagged as poor quality0
Sequence length86
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT77850.4113836759152692No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCT36150.1910278726311751No Hit
GAGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC32580.17216287940037855No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30200.1595862172465142No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA28870.15255808251347236No Hit
AAGAGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCT28310.14959886788903368No Hit
TAGAGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCT26290.13892455799373704No Hit
GCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG25190.13311181498144678No Hit
CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC22770.12032378035440822No Hit
AAGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC21030.11112907777133091No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)