FastQCFastQC Report
Sat 31 Dec 2022
SRR1953471.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953471.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1134957
Sequences flagged as poor quality0
Sequence length86
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41220.3631855656205477No Hit
GAGAGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCT24710.2177174994294938No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA24020.21163797394967387No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA21170.18652689044606977No Hit
GAGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC17000.14978541037237533No Hit
AAGAGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCT15720.13850745006198473No Hit
TAGAGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCT15280.13463065120528794No Hit
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC13570.11956400110312548No Hit
AAGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC13030.11480611159717946No Hit
GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG12350.10881469518228444No Hit
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG11640.10255895157261465No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)