FastQCFastQC Report
Sat 31 Dec 2022
SRR1953467.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953467.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1271005
Sequences flagged as poor quality0
Sequence length86
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40990.32250069826633254No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA21820.17167517043599356No Hit
GAGAGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCT19710.15507413424809502No Hit
GAGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTC19370.15239908576284122No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17660.13894516543994714No Hit
AAGAGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCT15280.12021982604317055No Hit
TAGAGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCT15010.11809552283429256No Hit
AAGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTC14130.11117186793128271No Hit
GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG13860.10904756472240472No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)