FastQCFastQC Report
Sat 31 Dec 2022
SRR1953466.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953466.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences992691
Sequences flagged as poor quality0
Sequence length86
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT43730.44051975891793116No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA19120.19260777019233577No Hit
GGGCAAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT13660.13760576050352022No Hit
GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTG12720.1281365500442736No Hit
CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC12510.1260210881331653No Hit
CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTG12470.12561814300723992No Hit
TTAGTGGGGGTGTGTTTGTAAAAATAAGGTATCAGGTTGGGTATTATTAG11230.11312684410355285No Hit
TATGTAGGGATCTAAATCTTGTGTTCTGTACATGTGATGTTTGACTGTAC11030.11111211847392594No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT10150.10224732570356737No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)