FastQCFastQC Report
Sat 31 Dec 2022
SRR1953465.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953465.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences638239
Sequences flagged as poor quality0
Sequence length86
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22970.35989652778974646No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA9370.1468102074614682No Hit
GAGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC8200.12847851666852073No Hit
GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTG7690.1204877796562103No Hit
GAGAGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCT6920.10842333357880042No Hit
CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC6430.10074595880226686No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)