FastQCFastQC Report
Sat 31 Dec 2022
SRR1953464.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953464.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1315315
Sequences flagged as poor quality0
Sequence length86
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53480.4065946180192578No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA24030.1826938794129163No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17590.13373222383991668No Hit
GAGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTC15710.11943906972854412No Hit
CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC15670.11913496006660002No Hit
GCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG14590.11092399919410939No Hit
CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG14510.1103157798702212No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)