FastQCFastQC Report
Sat 31 Dec 2022
SRR1953463.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1953463.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1275573
Sequences flagged as poor quality0
Sequence length86
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT61080.47884362557062593No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA21140.16572944080817015No Hit
GAGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC20760.16275038747292392No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18940.14848228991990267No Hit
CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC18150.14228899482820662No Hit
GAGAGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT17760.1392315453525592No Hit
AAGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC17390.13633088815771421No Hit
AAGAGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT16690.13084315832962912No Hit
GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG14460.11336081902015799No Hit
TAGAGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT13350.10465884743562305No Hit
CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG13290.10418847059321576No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)